General information
The SALSA MLPA
Probemix P417 BAP1 is a
research use only (RUO) assay for the detection of deletions or duplications in the
BAP1 gene, which is associated with BAP1 tumour predisposition syndrome.
BAP1 tumour predisposition syndrome (OMIM# 614327) is inherited in an autosomal dominant manner. Individuals carrying heterozygous
BAP1 mutations are at high-risk for the development of a variety of tumours, including benign melanocytic tumours as well as several malignant tumours, including uveal melanoma, cutaneous melanoma, malignant mesothelioma upon exposure to asbestos, and other cancer types, such as renal cell carcinoma, basal cell carcinoma, lung adenocarcinoma and meningioma (Wiesner et al. 2011, Abdel-Rahman et al. 2011, Boru et al. 2019).
In addition, research suggests that uveal melanoma with monosomy of chromosome 3 (frequency 50-60% of all uveal melanomas) represents a distinct pathological entity as compared to uveal melanoma with normal disomy 3. The putative target gene on the 3p arm is
BAP1 on 3p21.1, as inactivating somatic mutations of
BAP1 are identified in >80% of patients with metastasizing uveal melanoma (Harbour et al. 2010). Moreover,
BAP1 is commonly inactivated by somatic mutations and 3p21.1 losses in malignant pleural mesothelioma (Testa et al. 2011, Bott et al. 2011).
More information is available at
https://www.ncbi.nlm.nih.gov/books/NBK390611/
This SALSA MLPA probemix is not CE/FDA registered for use in diagnostic procedures. Purchase of this product includes a limited license for research purposes.
Probemix content
The SALSA MLPA Probemix P417-B3 BAP1 contains 42 MLPA probes with amplification products between 132 and 395 nucleotides (nt). This includes 17 probes for the
BAP1 gene and 11 flanking probes included for the determination of the extent of the deletion or duplication. In addition, 14 reference probes are included that target relatively copy number stable regions in various cancer types including melanocytic tumours and mesothelioma. Complete probe sequences and the identity of the genes detected by the reference probes are available online (
www.mrcholland.com).
This probemix contains nine quality control fragments generating amplification products between 64 and 105 nt: four DNA Quantity fragments (Q-fragments), two DNA Denaturation fragments (D-fragments), one Benchmark fragment, and one chromosome X and one chromosome Y-specific fragment. More information on how to interpret observations on these control fragments can be found in the MLPA General Protocol and online at
www.mrcholland.com.